I’ve updated to nexus 3.91.1-04 and I’m still seeing issues with the rebuild of our metatdata:
2026-04-22 12:45:14,444-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /8/x86_64/zenmap-7.98-1.noarch.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,445-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /8/x86_64/zenmap-7.98-1.noarch.rpm found in the repository. Skip it.
2026-04-22 12:45:14,445-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /8/x86_64/bind-9.18.43-01WIN.el8.x86_64.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,446-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /8/x86_64/bind-9.18.43-01WIN.el8.x86_64.rpm found in the repository. Skip it.
2026-04-22 12:45:14,446-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /8/x86_64/bind-subscription-9.18.43-01WIN.el8.x86_64.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,446-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /8/x86_64/bind-subscription-9.18.43-01WIN.el8.x86_64.rpm found in the repository. Skip it.
2026-04-22 12:45:14,447-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Rebuilding metadata yum-isp-apps:/8/x86_64/
2026-04-22 12:45:14,447-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Starting rebuilding metadata at yum-isp-apps : /8/x86_64/
2026-04-22 12:45:14,448-0500 ERROR [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Failed to rebuild metadata yum-isp-apps : /8/x86_64/
org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumMetadataRebuildException: Failed to initialize yum metadata files for rebuilding metadata at /8/x86_64/
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumMetadataRebuilder.start(YumMetadataRebuilder.java:105)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.doRebuildMetadata(YumHostedMetadataFacet.java:457)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.lambda$12(YumHostedMetadataFacet.java:430)
at org.sonatype.nexus.common.cooperation2.ScopedCooperation2Support$ScopedCooperation2Builder.perform(ScopedCooperation2Support.java:86)
at org.sonatype.nexus.common.cooperation2.datastore.internal.CooperatingFuture.performCall(CooperatingFuture.java:126)
at org.sonatype.nexus.common.cooperation2.datastore.internal.CooperatingFuture.call(CooperatingFuture.java:68)
at org.sonatype.nexus.common.cooperation2.ScopedCooperation2Support$ScopedCooperation2Builder.cooperate(ScopedCooperation2Support.java:103)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.rebuildMetadata(YumHostedMetadataFacet.java:432)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.invalidateMetadataWithoutWaiting(YumHostedMetadataFacet.java:305)
at org.sonatype.nexus.repository.yum.internal.createrepo.task.YumCreateRepoTask.execute(YumCreateRepoTask.java:35)
at org.sonatype.nexus.repository.RepositoryTaskSupport.execute(RepositoryTaskSupport.java:90)
at org.sonatype.nexus.scheduling.TaskSupport.call(TaskSupport.java:107)
at org.sonatype.nexus.quartz.internal.task.QuartzTaskJob.doExecute(QuartzTaskJob.java:147)
at org.sonatype.nexus.quartz.internal.task.QuartzTaskJob.execute(QuartzTaskJob.java:110)
at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
at org.sonatype.nexus.quartz.internal.QuartzThreadPool.lambda$0(QuartzThreadPool.java:145)
at org.sonatype.nexus.thread.internal.MDCAwareRunnable.run(MDCAwareRunnable.java:40)
at org.apache.shiro.subject.support.SubjectRunnable.doRun(SubjectRunnable.java:120)
at org.apache.shiro.subject.support.SubjectRunnable.run(SubjectRunnable.java:108)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:572)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.nio.file.AccessDeniedException: ../sonatype-work/nexus3/tmp/filelist15666113519809930930xml.gz
at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:90)
at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:106)
at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:261)
at java.base/java.nio.file.Files.newByteChannel(Files.java:380)
at java.base/java.nio.file.Files.createFile(Files.java:658)
at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:136)
at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:159)
at java.base/java.nio.file.Files.createTempFile(Files.java:924)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumMetadataRebuilder.start(YumMetadataRebuilder.java:87)
… 23 common frames omitted
2026-04-22 12:45:14,448-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Start cleaning metadata datastore entries for missed RPMs for repoLocation /9/x86_64/
2026-04-22 12:45:14,449-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/connmon-1.0.0-1.el9.noarch.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,449-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/connmon-1.0.0-1.el9.noarch.rpm found in the repository. Skip it.
2026-04-22 12:45:14,449-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/connmon-1.0.2-1.el9.noarch.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,450-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/connmon-1.0.2-1.el9.noarch.rpm found in the repository. Skip it.
2026-04-22 12:45:14,450-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/telegraf-1.35.2-1.x86_64.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,450-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/telegraf-1.35.2-1.x86_64.rpm found in the repository. Skip it.
2026-04-22 12:45:14,450-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/ncat-7.97-1.x86_64.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,451-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/ncat-7.97-1.x86_64.rpm found in the repository. Skip it.
2026-04-22 12:45:14,451-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/nmap-7.97-1.x86_64.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,452-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/nmap-7.97-1.x86_64.rpm found in the repository. Skip it.
2026-04-22 12:45:14,452-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/nping-7.97-1.x86_64.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,452-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/nping-7.97-1.x86_64.rpm found in the repository. Skip it.
2026-04-22 12:45:14,453-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/zenmap-7.97-1.noarch.rpm metadata if this file does not exist in repository
2026-04-22 12:45:14,453-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/zenmap-7.97-1.noarch.rpm found in the repository. Skip it.
2026-04-22 12:45:14,453-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Rebuilding metadata yum-isp-apps:/9/x86_64/
2026-04-22 12:45:14,453-0500 DEBUG [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Starting rebuilding metadata at yum-isp-apps : /9/x86_64/
2026-04-22 12:45:14,454-0500 ERROR [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Failed to rebuild metadata yum-isp-apps : /9/x86_64/
org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumMetadataRebuildException: Failed to initialize yum metadata files for rebuilding metadata at /9/x86_64/
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumMetadataRebuilder.start(YumMetadataRebuilder.java:105)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.doRebuildMetadata(YumHostedMetadataFacet.java:457)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.lambda$12(YumHostedMetadataFacet.java:430)
at org.sonatype.nexus.common.cooperation2.ScopedCooperation2Support$ScopedCooperation2Builder.perform(ScopedCooperation2Support.java:86)
at org.sonatype.nexus.common.cooperation2.datastore.internal.CooperatingFuture.performCall(CooperatingFuture.java:126)
at org.sonatype.nexus.common.cooperation2.datastore.internal.CooperatingFuture.call(CooperatingFuture.java:68)
at org.sonatype.nexus.common.cooperation2.ScopedCooperation2Support$ScopedCooperation2Builder.cooperate(ScopedCooperation2Support.java:103)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.rebuildMetadata(YumHostedMetadataFacet.java:432)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.invalidateMetadataWithoutWaiting(YumHostedMetadataFacet.java:305)
at org.sonatype.nexus.repository.yum.internal.createrepo.task.YumCreateRepoTask.execute(YumCreateRepoTask.java:35)
at org.sonatype.nexus.repository.RepositoryTaskSupport.execute(RepositoryTaskSupport.java:90)
at org.sonatype.nexus.scheduling.TaskSupport.call(TaskSupport.java:107)
at org.sonatype.nexus.quartz.internal.task.QuartzTaskJob.doExecute(QuartzTaskJob.java:147)
at org.sonatype.nexus.quartz.internal.task.QuartzTaskJob.execute(QuartzTaskJob.java:110)
at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
at org.sonatype.nexus.quartz.internal.QuartzThreadPool.lambda$0(QuartzThreadPool.java:145)
at org.sonatype.nexus.thread.internal.MDCAwareRunnable.run(MDCAwareRunnable.java:40)
at org.apache.shiro.subject.support.SubjectRunnable.doRun(SubjectRunnable.java:120)
at org.apache.shiro.subject.support.SubjectRunnable.run(SubjectRunnable.java:108)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:572)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.nio.file.AccessDeniedException: ../sonatype-work/nexus3/tmp/filelist2333225115060907998xml.gz
at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:90)
at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:106)
at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:261)
at java.base/java.nio.file.Files.newByteChannel(Files.java:380)
at java.base/java.nio.file.Files.createFile(Files.java:658)
at java.base/java.nio.file.TempFileHelper.create(TempFileHelper.java:136)
at java.base/java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:159)
at java.base/java.nio.file.Files.createTempFile(Files.java:924)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumMetadataRebuilder.start(YumMetadataRebuilder.java:87)
… 23 common frames omitted
2026-04-22 12:45:14,454-0500 INFO [quartz-12-thread-13] *TASK org.sonatype.nexus.repository.yum.internal.createrepo.task.YumCreateRepoTask - Task complete