Here is the full trace. It looks like the rebuild is attempting to remove packages from the directories.
Blockquote
2026-02-27 10:39:43,716-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /8/x86_64/bind-subscription-9.18.43-01WIN.el8.x86_64.rpm metadata if this file does not exist in repository
2026-02-27 10:39:43,717-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /8/x86_64/bind-subscription-9.18.43-01WIN.el8.x86_64.rpm found in the repository. Skip it.
2026-02-27 10:39:43,717-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Rebuilding metadata yum-isp-apps:/8/x86_64/
2026-02-27 10:39:43,717-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Starting rebuilding metadata at yum-isp-apps : /8/x86_64/
2026-02-27 10:39:43,780-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Completed metadata rebuild in 63
2026-02-27 10:39:43,780-0600 ERROR [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Failed to rebuild metadata yum-isp-apps : /8/x86_64/
java.lang.NullPointerException: null
at com.google.common.base.Preconditions.checkNotNull(Preconditions.java:903)
at org.sonatype.nexus.repository.view.payloads.PathPayload.(PathPayload.java:40)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumMetadataRebuilder.getFileList(YumMetadataRebuilder.java:174)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.writeMetadata(YumHostedMetadataFacet.java:491)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.doRebuildMetadata(YumHostedMetadataFacet.java:475)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.lambda$12(YumHostedMetadataFacet.java:430)
at org.sonatype.nexus.common.cooperation2.ScopedCooperation2Support$ScopedCooperation2Builder.perform(ScopedCooperation2Support.java:86)
at org.sonatype.nexus.common.cooperation2.datastore.internal.CooperatingFuture.performCall(CooperatingFuture.java:126)
at org.sonatype.nexus.common.cooperation2.datastore.internal.CooperatingFuture.call(CooperatingFuture.java:68)
at org.sonatype.nexus.common.cooperation2.ScopedCooperation2Support$ScopedCooperation2Builder.cooperate(ScopedCooperation2Support.java:103)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.rebuildMetadata(YumHostedMetadataFacet.java:432)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.invalidateMetadataWithoutWaiting(YumHostedMetadataFacet.java:305)
at org.sonatype.nexus.repository.yum.internal.createrepo.task.YumCreateRepoTask.execute(YumCreateRepoTask.java:35)
at org.sonatype.nexus.repository.RepositoryTaskSupport.execute(RepositoryTaskSupport.java:90)
at org.sonatype.nexus.scheduling.TaskSupport.call(TaskSupport.java:107)
at org.sonatype.nexus.quartz.internal.task.QuartzTaskJob.doExecute(QuartzTaskJob.java:147)
at org.sonatype.nexus.quartz.internal.task.QuartzTaskJob.execute(QuartzTaskJob.java:110)
at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
at org.sonatype.nexus.quartz.internal.QuartzThreadPool.lambda$0(QuartzThreadPool.java:145)
at org.sonatype.nexus.thread.internal.MDCAwareRunnable.run(MDCAwareRunnable.java:40)
at org.apache.shiro.subject.support.SubjectRunnable.doRun(SubjectRunnable.java:120)
at org.apache.shiro.subject.support.SubjectRunnable.run(SubjectRunnable.java:108)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:572)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642)
at java.base/java.lang.Thread.run(Thread.java:1583)
2026-02-27 10:39:43,781-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Start cleaning metadata datastore entries for missed RPMs for repoLocation /9/x86_64/
2026-02-27 10:39:43,782-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/telegraf-1.35.2-1.x86_64.rpm metadata if this file does not exist in repository
2026-02-27 10:39:43,783-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/telegraf-1.35.2-1.x86_64.rpm found in the repository. Skip it.
2026-02-27 10:39:43,783-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/ncat-7.97-1.x86_64.rpm metadata if this file does not exist in repository
2026-02-27 10:39:43,783-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/ncat-7.97-1.x86_64.rpm found in the repository. Skip it.
2026-02-27 10:39:43,784-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/nmap-7.97-1.x86_64.rpm metadata if this file does not exist in repository
2026-02-27 10:39:43,784-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/nmap-7.97-1.x86_64.rpm found in the repository. Skip it.
2026-02-27 10:39:43,785-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/nping-7.97-1.x86_64.rpm metadata if this file does not exist in repository
2026-02-27 10:39:43,785-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/nping-7.97-1.x86_64.rpm found in the repository. Skip it.
2026-02-27 10:39:43,785-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Trying to remove RPM /9/x86_64/zenmap-7.97-1.noarch.rpm metadata if this file does not exist in repository
2026-02-27 10:39:43,786-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Asset /9/x86_64/zenmap-7.97-1.noarch.rpm found in the repository. Skip it.
2026-02-27 10:39:43,786-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Rebuilding metadata yum-isp-apps:/9/x86_64/
2026-02-27 10:39:43,786-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Starting rebuilding metadata at yum-isp-apps : /9/x86_64/
2026-02-27 10:39:43,788-0600 DEBUG [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Completed metadata rebuild in 2
2026-02-27 10:39:43,788-0600 ERROR [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet - Failed to rebuild metadata yum-isp-apps : /9/x86_64/
java.lang.NullPointerException: null
at com.google.common.base.Preconditions.checkNotNull(Preconditions.java:903)
at org.sonatype.nexus.repository.view.payloads.PathPayload.(PathPayload.java:40)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumMetadataRebuilder.getFileList(YumMetadataRebuilder.java:174)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.writeMetadata(YumHostedMetadataFacet.java:491)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.doRebuildMetadata(YumHostedMetadataFacet.java:475)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.lambda$12(YumHostedMetadataFacet.java:430)
at org.sonatype.nexus.common.cooperation2.ScopedCooperation2Support$ScopedCooperation2Builder.perform(ScopedCooperation2Support.java:86)
at org.sonatype.nexus.common.cooperation2.datastore.internal.CooperatingFuture.performCall(CooperatingFuture.java:126)
at org.sonatype.nexus.common.cooperation2.datastore.internal.CooperatingFuture.call(CooperatingFuture.java:68)
at org.sonatype.nexus.common.cooperation2.ScopedCooperation2Support$ScopedCooperation2Builder.cooperate(ScopedCooperation2Support.java:103)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.rebuildMetadata(YumHostedMetadataFacet.java:432)
at org.sonatype.nexus.repository.yum.datastore.internal.createrepo.YumHostedMetadataFacet.invalidateMetadataWithoutWaiting(YumHostedMetadataFacet.java:305)
at org.sonatype.nexus.repository.yum.internal.createrepo.task.YumCreateRepoTask.execute(YumCreateRepoTask.java:35)
at org.sonatype.nexus.repository.RepositoryTaskSupport.execute(RepositoryTaskSupport.java:90)
at org.sonatype.nexus.scheduling.TaskSupport.call(TaskSupport.java:107)
at org.sonatype.nexus.quartz.internal.task.QuartzTaskJob.doExecute(QuartzTaskJob.java:147)
at org.sonatype.nexus.quartz.internal.task.QuartzTaskJob.execute(QuartzTaskJob.java:110)
at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
at org.sonatype.nexus.quartz.internal.QuartzThreadPool.lambda$0(QuartzThreadPool.java:145)
at org.sonatype.nexus.thread.internal.MDCAwareRunnable.run(MDCAwareRunnable.java:40)
at org.apache.shiro.subject.support.SubjectRunnable.doRun(SubjectRunnable.java:120)
at org.apache.shiro.subject.support.SubjectRunnable.run(SubjectRunnable.java:108)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:572)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642)
at java.base/java.lang.Thread.run(Thread.java:1583)
2026-02-27 10:39:43,789-0600 INFO [quartz-12-thread-11] *TASK org.sonatype.nexus.repository.yum.internal.createrepo.task.YumCreateRepoTask - Task complete